Words similar to pdb

Example sentences for: pdb

How can you use “pdb” in a sentence? Here are some example sentences to help you improve your vocabulary:

A search with the APSES domain (PDB 1bm8) using the VAST program [ 22] detected significant structural alignments with both the LAGLIDADG and the TEN domains ( p approximately 10 -4).
A search of the PDB database using the DALI program [ 61 ] , with this β-barrel from Thermus thermophilus β' subunit submitted as a query (pdb: 1iw7, chain D region: 625-749), retrieved the N-terminal domain of the CDC48-like AAA ATPases, formate dehydrogenases, aspartate decarboxylases and Barwin.
Using the experimentally determined structure as a guide, we split the β and β' subunits of the Thermus thermophilus DDRP and the largest two subunits of the yeast DDRP into individual globular domains and investigated them by visual inspection of the topology, structural searches of the PDB database using the DALI program and iterative searches of the NR database using PSI-BLAST.
03202001 "as putative cinnamyl-alcohol dehydrogenase", based on sequence similarity (its top 10 BLAST matches are all cinnamyl-alcohol dehydrogenases with E-values in the range of 10 -94if analyzed against all non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF on Jan 2, 2002).
Some examples are listed in Table 4. For example, the AP2-domain is a DNA-binding transcription factor that controls flower and seed development [ 20 ] in Arabidopsis . The structure of the AP2 domain is found in the PDB (1gcc) [ 21 ] . Standard BLAST using the 1gcc sequence provides 140 hits at p < 0.1 (a very weak threshold).