Example sentences for: pdb

How can you use “pdb” in a sentence? Here are some example sentences to help you improve your vocabulary:

  • The amino acid sequence of ButaIT was submitted to Swiss-Model Protein modeling server (Guex and Peitsch, 1997; Peitsch, 1995; Peitsch, 1996; Preitsch and Guex, 1997) and the three dimensional model structure was extracted as PDB file based on the NMR coordinates of apparently homologous scorpion toxins such as chlorotoxin (PDB entry : 1Chl.pdb) and insectotoxin I5A (PDB entry: 1SIS.pdb).

  • Both 3DPSSM and PSIPRED gave hits (E-value approximately 0.05 for 3DPSSM and probability of matching approximately 0.8 for PSIPRED) that implied a 90% certainty of the KilA-N domain adopting the same fold as the APSES domain (PDB 1bm8/1bm1).

  • Visualization of the 3D structure was performed using RasMol Molecular PDB visualization software.

  • Structural manipulations were carried out using the Swiss-PDB viewer program [ 68] and the ribbon diagrams were constructed with MOLSCRIPT [ 69].

  • PDB = protein databank

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