Words similar to phylip

Example sentences for: phylip

How can you use “phylip” in a sentence? Here are some example sentences to help you improve your vocabulary:

Briefly, this involved the construction of a least-squares tree using the FITCH program or a neighbor-joining tree using the NEIGHBOR program (both from the PHYLIP package) [ 46], followed by local rearrangement using the Protml program of the Molphy package [ 42] to arrive at the maximum likelihood (ML) tree.
The alignment in Phylip format used to calculate the NodL tree
95 [ 41 42 ] [ 43 ] . Trees were constructed from the distance matrices obtained with the above distance estimates using the neighbor-joining method [ 40 ] as implemented in the NEIGHBOR program of the PHYLIP package [ 44 ] . Bootstrap values were estimated by resampling the set of orthologs identified for each pair of genomes 1000 times and reconstructing trees from the distributions of the distances from these resampled sets.
The PROTDIST and FITCH programs are modules of the PHYLIP software package [ 31].
For the maximum-likelihood trees, the experimental versions of the programs PROML (no assumption of molecular clock) and PROMLK (molecular clock assumed) from PHYLIP version 3.6a3 were used with the JTT evolutionary model and with the assumption of constant change rate between sites.