Words similar to interpro

Example sentences for: interpro

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The entire predicted protein-coding sequence of each gene obtained from the MIPS website was then used to search the InterPro database [ 37 ] for identifying protein domains.
PH domains are commonly found in signaling proteins [ 22 ] . Additional domains found in this protein (also documented by TAIR as InterPro domains) include FYVE/PHD zinc finger and an RCC1 like domain (a regulator of chromosome condensation), with A and B reliabilities respectively.
Proteins containing EF hands were first identified using the InterPro Domain Table at MIPS A. thaliana database (MAtDB) [ 39].
To assign putative functions to clusters, the integrated protein domain recognition program InterProScan [ 97 98 ] was run locally to search translated contig consensus sequences versus all InterPro protein domains (as of 2 April 2002) [ 99 ] . The Prosite, Prints, Pfam, ProDom, and Smart search components of InterProScan were used with default parameters.
We used the translated protein sequences from these intergenic ORFs and analyzed them using InterPro Scan via EXPASY.