Example sentences for: interpro

How can you use “interpro” in a sentence? Here are some example sentences to help you improve your vocabulary:

  • To identify EF-hand-containing proteins in Arabidopsis, the protein sequences listed as having EF-hands in the InterPro Domain Table at MAtDB [ 39] were retrieved.

  • Using InterPro Scan via EXPASY, we determined that these few amino acids do not produce any potential phosphorylation sites or protein domains or motifs.

  • We used the translated protein sequences from these intergenic ORFs and analyzed them using InterPro Scan via EXPASY.

  • To assign putative functions to clusters, the integrated protein domain recognition program InterProScan [ 97 98 ] was run locally to search translated contig consensus sequences versus all InterPro protein domains (as of 2 April 2002) [ 99 ] . The Prosite, Prints, Pfam, ProDom, and Smart search components of InterProScan were used with default parameters.

  • To identify proteins not listed in the InterPro Domain Table at MAtDB, BLAST searches were done with three different EF-hand-containing proteins: calmodulin, KIC, and a Ca 2+-dependent protein kinase (CPK1).


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