Words similar to interpro

Example sentences for: interpro

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This allows queries by gene, by genomic or map region, by Gene Ontology (GO) assignments or by InterPro domains.
To identify proteins not listed in the InterPro Domain Table at MAtDB, BLAST searches were done with three different EF-hand-containing proteins: calmodulin, KIC, and a Ca 2+-dependent protein kinase (CPK1).
One useful and automatable phylogenomics approach would be as follows: if a novel sequence has orthologs, annotation can be transferred from them (as in best BLAST analysis); if there are no orthologs, the sequence is classified as just a family member (as in Pfam/InterPro analysis) and flagged as possibly the first representative of a novel subfamily.
The InterPro domain table also lists the EF-hand-containing proteins for Saccharomyces cerevisiae (29), Caenorhabditis elegans (139) and Drosophila melanogaster (132).
To assign putative functions to clusters, the integrated protein domain recognition program InterProScan [ 97 98 ] was run locally to search translated contig consensus sequences versus all InterPro protein domains (as of 2 April 2002) [ 99 ] . The Prosite, Prints, Pfam, ProDom, and Smart search components of InterProScan were used with default parameters.