Example sentences for: interpro

How can you use “interpro” in a sentence? Here are some example sentences to help you improve your vocabulary:

  • To identify EF-hand-containing proteins in Arabidopsis, the protein sequences listed as having EF-hands in the InterPro Domain Table at MAtDB [ 39] were retrieved.

  • The InterPro domain table also lists the EF-hand-containing proteins for Saccharomyces cerevisiae (29), Caenorhabditis elegans (139) and Drosophila melanogaster (132).

  • One useful and automatable phylogenomics approach would be as follows: if a novel sequence has orthologs, annotation can be transferred from them (as in best BLAST analysis); if there are no orthologs, the sequence is classified as just a family member (as in Pfam/InterPro analysis) and flagged as possibly the first representative of a novel subfamily.

  • The entire predicted protein-coding sequence of each gene obtained from the MIPS website was then used to search the InterPro database [ 37 ] for identifying protein domains.

  • For protein superfamilies, 21 out of 606 families account for half of the 15,450 assigned domains, and only 37 of 1,936 InterPro families match half of the 12,589 assigned proteins.

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