Example sentences for: blastn

How can you use “blastn” in a sentence? Here are some example sentences to help you improve your vocabulary:

  • DNA and protein database searches were performed using the BLAST services (blastn, blastp, and psi-blast) at the National Center for Biotechnology Information (NCBI) [ 35 36 ] and the genomes site at The Institute for Genomic Research http://www.tigr.org.

  • BLASTN matches with an arbitrary threshold expect value (

  • Each gene and each predicted gene product was also subjected to gap BLASTX and BLASTN respectively http://www.ncbi.nlm.nih.gov/BLAST/ [ 20 ] . The similarity between two different DNA sequences was determined using the BLAST 2 sequence program from http://www.ncbi.nlm.nih.gov/blast/bl2seq/bl2.html [ 21 ] . Hydrophilicity profiles of the gene product of each Cpn 1054 family member was determined using hydropathy plot analysis ( [ 22 ] MacVector™).

  • This was done by performing searches with BLASTP (for protein comparisons and for searching protein datasets with protein queries) or BLASTN (for nucleotide comparisons) or TBLASTN (for searching nucleotide datasets with protein query sequences) using one sequence as bait against a BLAST-formatted database containing the other sequence.

  • To avoid problems due to possible gene misannotations, these results were verified using a BLASTN query.


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