Words similar to blastclust
Example sentences for: blastclust
How can you use “blastclust” in a sentence? Here are some example sentences to help you improve your vocabulary:
Protein secondary structure was predicted using a multiple alignment as the input for the JPRED and PHD programs [ 42 43 44 ] . Preliminary clustering of proteins was done using the BLASTCLUST program with empirically determined length and score threshold cut off values (For documentation see ftp://ftp.ncbi.nih.gov/blast/documents/README.bcl).
The encoded amino-acid sequences were clustered at 99% similarity threshold using BLASTCLUST [ 30] to remove redundant sequences.
The monophyletic clusters that emerged in this analysis were essentially the same as those that were derived through similarity based clustering using BLASTCLUST.
Clusters of paralogs were identified by comparing the protein sequences encoded by all genes from each genome using the BLASTP program [ 77] followed by single-linkage clustering using the BLASTCLUST program (I.
All the NlpC/P60 homologs recovered in the above searches were collated and clustered at various thresholds of BLAST-bit-score to high-scoring pairs (HSP)-length ratios using the BLASTCLUST program.