Example sentences for: blastclust

How can you use “blastclust” in a sentence? Here are some example sentences to help you improve your vocabulary:

  • Protein secondary structure was predicted using a multiple alignment as the input for the JPRED and PHD programs [ 42 43 44 ] . Preliminary clustering of proteins was done using the BLASTCLUST program with empirically determined length and score threshold cut off values (For documentation see ftp://ftp.ncbi.nih.gov/blast/documents/README.bcl).

  • Protein secondary structure was predicted using a multiple alignment as the input for the JPRED and PHD programs [ 39 40 ] . Preliminary clustering of proteins was done using the BLASTCLUST program with empirically determined length and score threshold cut off values (For documentation see ftp://ftp.ncbi.nih.gov/blast/documents/README.bcl).

  • Homologs recovered in the searches were collated and clustered at various thresholds of BLAST-bit-score to HSP-length ratios using the BLASTCLUST program [ 67].

  • The encoded amino-acid sequences were clustered at 99% similarity threshold using BLASTCLUST [ 30] to remove redundant sequences.

  • The monophyletic clusters that emerged in this analysis were essentially the same as those that were derived through similarity based clustering using BLASTCLUST.


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