Words similar to topologies

Example sentences for: topologies

How can you use “topologies” in a sentence? Here are some example sentences to help you improve your vocabulary:

Phylogenies were reconstructed from amino acid sequences aligned using CLUSTAL X 1.8 [ 45 ] . The topologies of the depicted trees were calculated using neighbor joining as implemented in CLUSTAL X with correction for multiple substitutions.
The topologies of the resulting trees were compared to each other and to the topology of a phylogenetic tree constructed on the basis of a concatenated alignment of ribosomal proteins, which was chosen as the (hypothetical) species tree of the organisms involved [ 13].
The alternative topologies were significantly supported by some QuartOPs, but the number of strongly supporting QuartOPs was lower than for the B. subtilis - Synechocystis grouping.
Similar tree topologies were obtained when the ribosomal protein data were analyzed using the neighbor-joining method and when bacterial phylogeny was analyzed separately by using a concatenated alignments of 51 ribosomal proteins shared by all bacteria (data not shown).
The underlying assumption is that the genes coding for ribosomal proteins that function as components of a large macromolecular complex are unlikely to undergo horizontal transfer, which tends to confound comparisons of the tree topologies for other protein families and would invalidate the concatenation approach.