Example sentences for: sequence-structure

How can you use “sequence-structure” in a sentence? Here are some example sentences to help you improve your vocabulary:

  • Among the many sequence-structure features of JEvTrace is the ability to highlight the residues in contact with a selected position, using a residue-residue distance calculation and a distance cutoff.

  • However, neither direct comparisons, nor sequence-structure threading revealed any relationship with the two other well-characterized α-helical heme-binding domains, namely globin and cytochrome C. Hence, it is likely that the HNOB domain adopts a structure distinct from these domains.

  • Sequence-structure threading was carried out using the combined-fold-prediction algorithm [ 22] or the 3D-PSSM algorithm based on the use of a three-dimensional position-specific scoring matrix [ 23].

  • To gain a better understanding of the functions and evolution of these regulatory proteins, we initiated a detailed analysis of their sequences using position-specific-score matrix searches, sequence-structure threading, secondary-structure prediction and structure comparisons.

  • A similar secondary structure pattern is also observed in several other ligand-binding domains such as the PAS, GAF, profilin and probably even the CACHE domains [ 10 ] . Sequence-structure threading using the 3DPSSM method detected the PAS domain (Photoactive yellow protein PDB: 1drm) with marginally significant scores (.5, 50-70% probability of correct fold prediction).


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