Words similar to secondary-structure

Example sentences for: secondary-structure

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Secondary-structure prediction using the Jpred method [ 19], with a multiple alignment of the KilA-N domain used as the input, pointed to an α + β fold with four conserved strands and at least two conserved helices.
Protein secondary-structure predictions were generated using the PHD program [ 59, 60], with multiple alignments of individual protein families used as queries.
The hybrid-fold-recognition method, which combines sequence-profile analysis with alignment-based secondary-structure prediction [ 22] and the 3D-PSSM method [ 23] both suggested a likely α-amylase-like triosephosphate isomerase (TIM) barrel structure for this protein family.
Thus, the Bro-N domain adopts an α + β fold; furthermore, the pattern of predicted secondary-structure elements was similar to that seen in the KilA-N domain and its relatives (Figure 3).
Additionally, secondary-structure prediction for the proposed PAS region using PHD indicated that this region is largely unstructured.