Words similar to rdp
Example sentences for: rdp
How can you use “rdp” in a sentence? Here are some example sentences to help you improve your vocabulary:
Initially, a limited amount of sequence and comparative structure information was available online for our 16S (and 16S-like) [ 46 47 ] and 23S (and 23S-like) ribosomal RNAs [ 48 49 50 51 52 ] and the group I introns [ 33 ] . In parallel, two other groups have been providing various forms of ribosomal RNA sequence and structure data (the RDP/RDP II [ 53 54 ] and Belgium (5S/5.
The aligned small subunit ribosomal RNA sequences were retrieved from the Ribosomal Database Project II http://rdp.cme.msu.edu [ 44 ] . Francine Perler (New England Biolabs) the curator of the intein database http://www.neb.com/inteins/int_reg.htmlkindly provided the sequences of all known inteins.
A third way that large libraries are often dereplicated requires submitting the sequences as batch files to a database (either local or remote), then searching the same sequences against the updated database using BLAST or Sequence Similarity http://www.cme.msu.edu/RDP/docs/sim_matrix_issues.html.
The following sequences were used for the 16S rRNA phylogeny (the sequences are available under these names from the Ribosomal Database Project II http://rdp.cme.msu.edu/: Sul.solfa4, Sul.acalda, Ap.pernixl, Mc.thlitho, Mc.janrrnA, Mb.tautot2, Pc.furios2, Pc.abyssi, AP000001, AB016298, Tpl.acidop, Arg.fulgid p, Hf.volcani, Hb.spCh2_2, Hb.salina2, Msr.mazei5, Msr.barke2, Dco.mobili.
The classical molecular phylogeny of SSU rRNA was obtained from the RDP database [ 32], and was used to estimate distances between the organisms on the basis of the number of substitutions between the sequences.
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