Words similar to rdp
Example sentences for: rdp
How can you use “rdp” in a sentence? Here are some example sentences to help you improve your vocabulary:
Initially, a limited amount of sequence and comparative structure information was available online for our 16S (and 16S-like) [ 46 47 ] and 23S (and 23S-like) ribosomal RNAs [ 48 49 50 51 52 ] and the group I introns [ 33 ] . In parallel, two other groups have been providing various forms of ribosomal RNA sequence and structure data (the RDP/RDP II [ 53 54 ] and Belgium (5S/5.
The following sequences were used for the 16S rRNA phylogeny (the sequences are available under these names from the Ribosomal Database Project II http://rdp.cme.msu.edu/: Sul.solfa4, Sul.acalda, Ap.pernixl, Mc.thlitho, Mc.janrrnA, Mb.tautot2, Pc.furios2, Pc.abyssi, AP000001, AB016298, Tpl.acidop, Arg.fulgid p, Hf.volcani, Hb.spCh2_2, Hb.salina2, Msr.mazei5, Msr.barke2, Dco.mobili.
The classical molecular phylogeny of SSU rRNA was obtained from the RDP database [ 32], and was used to estimate distances between the organisms on the basis of the number of substitutions between the sequences.
The aligned small subunit ribosomal RNA sequences were retrieved from the Ribosomal Database Project II http://rdp.cme.msu.edu [ 44 ] . Francine Perler (New England Biolabs) the curator of the intein database http://www.neb.com/inteins/int_reg.htmlkindly provided the sequences of all known inteins.
A third way that large libraries are often dereplicated requires submitting the sequences as batch files to a database (either local or remote), then searching the same sequences against the updated database using BLAST or Sequence Similarity http://www.cme.msu.edu/RDP/docs/sim_matrix_issues.html.
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