Words similar to protdist

Example sentences for: protdist

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Phylogenetic trees were constructed by first generating a distance matrix using the PROTDIST program and the Dayhoff PAM model for amino-acid substitutions and employing this matrix for minimum evolution (least-square) tree building [ 30] using the FITCH program.
The PROTDIST and FITCH programs are modules of the PHYLIP software package [ 31].
Phylogenetic trees were generated using ClustalX (for neighbor joining) and PHYLIP (for neighbor joining, parsimony and maximum likelihood using Protdist, Protpars, and ProML, respectively).
The distance matrix used in the latter programs was produced using the program Protdist with a Dayoff PAM matrix.
The distance matrix was obtained using Protdist with a Dayhoff Pam matrix.