Words similar to gtr
Example sentences for: gtr
How can you use “gtr” in a sentence? Here are some example sentences to help you improve your vocabulary:
GTR file for Figure 7
The complete 2,862 genes are displayed in two further figures (Additional data files 13and 14) with associated atr, cdt and gtr files (Additional data files 15, 16and 17).
Because bootstrap analysis using ML is not computationally feasible for large data sets [ 85 ] , we conducted a Bayesian analysis as an alternative employing optimization parameters similar to the nucleotide substitution model that we used for ML [ 86 87 ] . The distinction between ML and Bayesian inference is that Bayesian provides probabilities for hypotheses, not probabilities of data given a hypothesis [ 85 87 88 ] . Bayesian analysis uses Markov Chain Monte Carlo (MCMC) methods to approximate posterior probability distributions that are a direct estimation of branch support because they are the true probabilities of the resulting clades under the assumed models, unlike bootstrap values [ 87 88 ] . Additionally, bootstrap values and posterior probabilities derived from Bayesian analyses for multiple data sets appear to be correlated [ 88 ] . The Bayesian analysis was conducted with the software MrBayes 2.0 [ 89 ] . A GTR substitution model with 6 rate frequencies was selected as the most similar model to the Trn+G substitution model (the latter model is not available in MrBayes).
Therefore as an alternative, we conducted a Bayesian analysis utilizing a GTR model with 6 rate classes (A-C = 1, A-G = 3.19, A-T = 1, C-G = 1, C-T = 5.16, G-T = 1) for 1 × 10 6generations sampled every 10 generations that resulted in a posterior probability distribution containing 1 × 10 5samples.
The following files are available: a figure (Additional data file 1) showing the complete dataset for Figure 1, with associated array tree correlations (atr), complete data table (cdt) and gene tree correlations (gtr) files (Additional data files 2, 3and 4); a figure (Additional data file 5) showing the complete dataset for Figure 2, with associated atr, cdt and gtr files (Additional data files 6, 7and 8); a figure (Additional data file 9) showing the complete dataset for Figure 3, with associated atr, cdt and gtr files (Additional data files 10, 11and 12).
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