Words similar to dbest
Example sentences for: dbest
How can you use “dbest” in a sentence? Here are some example sentences to help you improve your vocabulary:
SLC4A9 has the most restricted expression pattern, evidenced by high tissue specificity and low dbEST representation.
Additional raw sequences were extracted from the July 31, 2002 NCBI GenBank dbEST build with the Entrez Search and Retrieval System (Table 1) [ 47 ] . Meloidogyne incognita and M. javanica datasets from NCBI (NMi and NMj respectively) contain the individual ESTs generated by the PNSP, and from which the clusters for the WMi and WMj datasets were generated.
Following gel image analysis and DNA sequence extraction, sequence data were processed in an automated pipeline to: assess EST quality; trim flanking vector sequences; mask repetitive elements; remove contaminated ESTs; identify similarities by BLAST; identify cloning artifacts; and determine which portion of the EST to submit [ 83 ] . The resulting sequences were annotated with similarity information and sequence quality information and submitted to dbEST.
To detect proteins with significant sequence similarity, we used BLASTX to compare translated genomic sequence to peptides in other species included in SWALL [ 13, 83], and TBLASTX to compare translated genomic sequence to virtual translations of the rodent UniGene set [ 84] and insect sequences in dbEST [ 69].
Further, because the available data included raw ESTs from the National Center for Biotechnology Information (NCBI) GenBank (dbEST) as well as clustered ESTs from the Parasitic Nematode Sequencing Project [ 22 28 29 ] , for which the data can be presumed to be significantly more reliable, we wished to compare the efficiency of reducing each dataset with this filter.
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