Example sentences for: dbest

How can you use “dbest” in a sentence? Here are some example sentences to help you improve your vocabulary:

  • The features in descending ranking were: UTRs based on known UTR indices; exons containing no ORFs or incomplete ORFs; boundaries of known full-length cDNAs (HTDB-based indices); EST orientation information (5' or 3' origin from the original IMAGE, UniGene/HINT, and dbEST databases); and Genscan-predicted poly(A) signals.

  • The evidence datasets used included: gene prediction based on Genie [ 20] and GENSCAN [ 21]; Sim4 alignments to EST and full-insert cDNA sequencing reads derived from the BDGP cDNA project [ 29, 30], the earlier analysis of the Adh region [ 44], and dbEST (for example [ 16]); FlyBase ARGS [ 1]; GenBank/EMBL/DDBJ entries identified as Drosophila cDNA sequences [ 6, 7, 8, 9, 10, 11] and error report submissions to FlyBase [ 1, 2]; and BLASTX protein homology data.

  • This method is highly dependent upon the quality of the information in dbEST.

  • The following databases were used: Human UTR-DB (EBI) (version 13) [ 70]; Human Transcript Database (Baylor University) (version 1) [ 71]; GenBank CDS (NCBI) (only PRI mRNA sequences were used, version 119) [ 72]; HINT (Ohio State University) [ 73]; EST Assembly Project (University of Washington) [ 74]; TIGR Human Gene Index (version 4.5) [ 75]; dbEST (NCBI) (version 119) [ 76]; MINT and RINT (Ohio State University) [ 73]; EMBL Rodent (EMBL) (version 63) [ 77]; SWISS-PROT (EMBL) (version 39) [ 78]; TrEMBL (EMBL) (version 14) [ 78]; PIR (MIPS-JIPID) (version 65) [ 79]; and Pfam (Sanger Centre) (version 5.4) [ 80].

  • 0, CA, Sybase Inc.) was created to mirror the public human EST database (dbEST).


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