Words similar to dbest
Example sentences for: dbest
How can you use “dbest” in a sentence? Here are some example sentences to help you improve your vocabulary:
The exon index is an integrated table generated by a Sybase relational database, consisting of chromosome number, fingerprinted contig (FPC) ID, FPC contig order, BAC contig ID, BAC contig order, BAC contig orientation, starting position of exon on BAC contig, end position of exon on BAC contig, exon orientation, transcript orientation (available from GenBank, IMAGE, UniGene, HINT and dbEST), evidence (transcript, protein, gene prediction, ORF, Pfam), database name (Table 1), feature (poly(A) signal, CpG island, Genscan boundary), starting position on exon (or feature), end position on exon (or feature), score (BlastN, BlastX).
A feature type is typically an association of that feature to the results produced by a particular analysis, for example, all features derived from a TBLASTX run against all mouse ESTs in dbEST might be given the type 'Mouse'.
NB over chromosome 1 using publicly available EST sequences from dbEST and reveals a number of "peaks" that represent transcripts that appear to be preferentially expressed in brain tissues.
1. Although predominantly expressed in uterus and other internal organs, transcripts have been isolated from brain and hypothalamus cDNA libraries (see dbEST).
It is possible however, that our in silico approach may have missed some genes, in particular those with small ORFs and/or large 5-prime and/or 3-prime UTRs [ 39 ] . As dbEST expands over the next few years, new genes may be identified with repeated in silico searches, or with biophysical approaches such as cDNA hybridization [ 40 ] , exon trapping [ 41 ] and amplification [ 42 ] , or by identification of evolutionary conserved sequences [ 43 ] and HTF islands [ 44 ] .
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