Words similar to dbest
Example sentences for: dbest
How can you use “dbest” in a sentence? Here are some example sentences to help you improve your vocabulary:
The evidence datasets used included: gene prediction based on Genie [ 20] and GENSCAN [ 21]; Sim4 alignments to EST and full-insert cDNA sequencing reads derived from the BDGP cDNA project [ 29, 30], the earlier analysis of the Adh region [ 44], and dbEST (for example [ 16]); FlyBase ARGS [ 1]; GenBank/EMBL/DDBJ entries identified as Drosophila cDNA sequences [ 6, 7, 8, 9, 10, 11] and error report submissions to FlyBase [ 1, 2]; and BLASTX protein homology data.
The exon index is an integrated table generated by a Sybase relational database, consisting of chromosome number, fingerprinted contig (FPC) ID, FPC contig order, BAC contig ID, BAC contig order, BAC contig orientation, starting position of exon on BAC contig, end position of exon on BAC contig, exon orientation, transcript orientation (available from GenBank, IMAGE, UniGene, HINT and dbEST), evidence (transcript, protein, gene prediction, ORF, Pfam), database name (Table 1), feature (poly(A) signal, CpG island, Genscan boundary), starting position on exon (or feature), end position on exon (or feature), score (BlastN, BlastX).
For instance, the Meloidogyne search included all dbEST sequences in the 'other nematode' set, resulting in matches for 61% of all clusters, whereas the Brugia search used only protein sequences in GenBank and saw matches in only around 12% of cases.
Presently, nearly four million ESTs (dbEST release 04/19/02) are catalogued in dbEST representing about 80% or more of all human genes with at least one representative entry [ 15 ] . While not every gene is accounted for in dbEST, computer database searching, also known as in silico cloning, can identify new genes without actual physically manipulating DNA.
Spotfinder data files (tab-delimited text files) and tables (Word files) showing (1) Differentially expressed genes in PA-1 and CaCO2 cell lines, and (2) genes differentially expressed in colon and ovary as determined using digital differential display to analyze sequence abundance in EST libraries deposited in dbEST, are available with as a zip file.
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