Words similar to blosum

Example sentences for: blosum

How can you use “blosum” in a sentence? Here are some example sentences to help you improve your vocabulary:

3. Maximum likelihood pairwise distance matrices are calculated for each of the x multiple alignments using a model of amino acid substitution (for example, BLOSUM [ 25 ] or Dayhoff PAM [ 26 ] ).
The resultant six partial alignments were then combined by using with the profile alignment procedure of ClustalX [ 57 ] with the Blosum100 scoring matrix.
For all three possible unrooted tree topologies maximum-likelihood values and posterior probabilities were calculated using in-house JAVA programs that were written utilizing classes from the Phylogenetic Analysis Library version 1.0 [ 54 ] and parts of Vanilla package version 1.0 [ 54 ] . If not indicated otherwise, likelihood values were estimated using the automatically selected suitable substitution model (chosen from BLOSUM62, CPREV, Dayhoff, JTT, MTREV24, VT and WAG) with no ASRV.
The recommended value of 5.0 times the residue diversity was used for the total number of pseudo-counts, and the amino acid substitution probabilities were taken from the BLOSUM 62 matrix [ 22 ] . A substitution matrix based on transmembrane helices [ 23 ] was also used in some cases, however, the results were not altered substantially.
The default matrix (BLOSUM62) and gap cost were used but a filter was not used in these searches.