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Example sentences for: abyssi
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We selected eight genomes from archaea: Archaeoglobus fulgidus (AF), Aeropyrum pernix K1 (AP), Halobacterium sp. (HS), Methanococcus jannaschii (MJ), Methanobacterium thermoautotrophicum (MT), Pyrococcus abyssi (PA), Pyrococcus horikoshii (PH), and Thermoplasma acidophilum (TA); 14 genomes from bacteria: Aquifex aeolicus (AA), Borrelia burgdorferi (BB), Bacillus subtilis (BS), Chlamydia pneumoniae strain AR39 (CP), Chlamydia trachomatis (CT), E. coli strain K12 (EC), Haemophilus influenzae (HI), Helicobacter pylori strain 26695 (HP), Mycobacterium tuberculosis (MyTu), Mycoplasma genitalium (MG), Mycoplasma pneumoniae (MP), Rickettsia prowazekii (RP), Synechocystis sp. (SS), and Treponema pallidum (TP); four genomes from eukaryotes: Saccharomyces cerevisiae (SC), D. melanogaster (DM), C. elegans (CE), and Arabidopsis thaliana (AT).
Data from the following species were assembled into presumptive orthology groups (hereafter, proteins) and aligned [ 36 ] : Aquifex aeolicus , Bacillus subtilis , Borrelia burgdorferi , Chlamydia trachomatis , Escherichia coli , Haemophilus influenzae , Helicobacter pylori, Mycobacterium tuberculosis, Mycoplasma genitalium, Mycoplasma pneumoniae , Rickettsia prowazekii, Synechocystis sp., and Treponema pallidum (Eubacteria), Archaeoglobus fulgidus, Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Pyrococcus abyssi , and P. horikoshii (Archaebacteria: Euryarchaeota), and Arabidopsis thaliana, Caenorhabditis elegans, Dictyostelium discoideum, Drosophila melanogaster, Gallus gallus, Homo sapiens, Mus musculus, Oryza saticva, Plasmodium falciparum, Saccharomyces cerevisiae, Schizosaccharomyces pombe, Trypanosoma sp. , and Xenopus laevis (Eukaryota).
Predicted proteomes for three Chlamydiaceae genomes ( Chlamydophila pneumoniae - CWL029, Chlamydia muridarum and Chlamydia trachomatis ) and two Pyrococcus genomes ( P. abyssi and P. horikoshii ) were obtained from the National Center for Biotechnology Information (NCBI) public server [ 26].
The following sequences were used for the 16S rRNA phylogeny (the sequences are available under these names from the Ribosomal Database Project II http://rdp.cme.msu.edu/: Sul.solfa4, Sul.acalda, Ap.pernixl, Mc.thlitho, Mc.janrrnA, Mb.tautot2, Pc.furios2, Pc.abyssi, AP000001, AB016298, Tpl.acidop, Arg.fulgid p, Hf.volcani, Hb.spCh2_2, Hb.salina2, Msr.mazei5, Msr.barke2, Dco.mobili.
Three genomes of intracellular pathogenic bacteria of the family Chlamydiaceae ( Chlamydophila pneumoniae , Chlamydia trachomatis and Chlamydia muridarum ) and three genomes of archaeal hyperthermophiles of the genus Pyrococcus ( Pyrococcus abyssi , P. horikoshii and P. furiosus ) were chosen for analysis.
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