Words similar to utr-db

Example sentences for: utr-db

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The following databases were used: Human UTR-DB (EBI) (version 13) [ 70]; Human Transcript Database (Baylor University) (version 1) [ 71]; GenBank CDS (NCBI) (only PRI mRNA sequences were used, version 119) [ 72]; HINT (Ohio State University) [ 73]; EST Assembly Project (University of Washington) [ 74]; TIGR Human Gene Index (version 4.5) [ 75]; dbEST (NCBI) (version 119) [ 76]; MINT and RINT (Ohio State University) [ 73]; EMBL Rodent (EMBL) (version 63) [ 77]; SWISS-PROT (EMBL) (version 39) [ 78]; TrEMBL (EMBL) (version 14) [ 78]; PIR (MIPS-JIPID) (version 65) [ 79]; and Pfam (Sanger Centre) (version 5.4) [ 80].
The following criteria were used to identify gene boundaries: known 5' or 3' UTR sequences in UTR-DB; full-length cDNAs in HTDB; exons in partial ORFs as possible boundaries of coding regions; exons without continuous ORFs as additional UTR sequences; CpG islands; and gene boundaries predicted by Genscan.
The total number of known genes in UTR-DB, HTDB and HINT is 16,673.
Transcripts with known boundary information (using the untranslated region database (UTR-DB)) [ 20] or full-length cDNAs in the human transcript database (HTDB) [ 21] were given precedence over other records.