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Example sentences for: tsdfinder

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Finally, analysis of inverted elements by TSDfinder provides strong, independent support for the twin-priming model.
These TSDs were selected by the TSDfinder program in part because the 3' TSD was preceded by a poly(A) tail (see Materials and methods).
The range of poly (A) tail lengths found by TSDfinder was 10-85 nucleotides.
1); in this way, we dealt primarily with young L1 elements [ 23 ] . The TSDfinder program [ 23 37 38 ] was run on the RepeatMasker *.out output files in order to find the TSDs of the L1 elements, thereby refining the L1 boundaries.
the scoring scheme for TSDfinder was revised during its development to assign a scoring penalty to TSDs less than 12 nucleotides long.