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Example sentences for: tsdfinder

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To facilitate this study, we wrote the software TSDfinder, which identifies the TSDs, poly(A) tails, and inversion breakpoints (if any) associated with L1s.
This finding, combined with generally high TSD scores and manual inspection of hundreds of L1s recovered, gives us confidence that the sequences identified by the TSDfinder algorithm represent actual TSDs.
As seen in Figure 2, the majority of TSDs identified by TSDfinder had high TSD scores (the scoring system is described in Materials and methods), with an average score of 117 out of a maximum possible score of 140.
Using a recently developed algorithm, TSDfinder [ 23 37 38 ] , we have precisely identified L1 insertions in the human genome whose sequence signature suggests an L1-TD.
We used the RepeatMasker [ 39 ] and TSDfinder [ 23 37 38 ] programs to identify 6,178 L1 elements that had a sequence structure consistent with 3' transduction in a recent build of the human genome.