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Example sentences for: tsdfinder
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To exclude the possibility that the abundance of the 11-20-nucleotide long TSDs in our collection is exclusively a result of this aspect of the scoring scheme, TSDfinder analysis of this dataset was repeated without rewarding a higher value to TSDs of length > 10 nucleotides, and the distribution of TSD lengths remained generally unchanged.
An important step for the validation of TSDfinder results was the analysis of the TSDs identified by the algorithm.
When a microhomology existed between the poly(A) tail and the TSD, the microhomologous region was arbitrarily considered part of the TSD by TSDfinder (Figure 1c).
In the TSDfinder program [ 33] written in Perl [ 56], L1 coordinates were parsed from the RepeatMasker results in the *.out file.
To facilitate this study, we wrote the software TSDfinder, which identifies the TSDs, poly(A) tails, and inversion breakpoints (if any) associated with L1s.
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