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Example sentences for: tsdfinder

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1); in this way, we dealt primarily with young L1 elements [ 23 ] . The TSDfinder program [ 23 37 38 ] was run on the RepeatMasker *.out output files in order to find the TSDs of the L1 elements, thereby refining the L1 boundaries.
We used the RepeatMasker [ 39 ] and TSDfinder [ 23 37 38 ] programs to identify 6,178 L1 elements that had a sequence structure consistent with 3' transduction in a recent build of the human genome.
For each L1 found, the program TSDfinder [ 33] was used to refine the location coordinates in the following ways.
These TSDs were selected by the TSDfinder program in part because the 3' TSD was preceded by a poly(A) tail (see Materials and methods).
During the same run of the TSDfinder program, L1-TDs were identified.