Words similar to tsdfinder

Example sentences for: tsdfinder

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the scoring scheme for TSDfinder was revised during its development to assign a scoring penalty to TSDs less than 12 nucleotides long.
Using a recently developed algorithm, TSDfinder [ 23 37 38 ] , we have precisely identified L1 insertions in the human genome whose sequence signature suggests an L1-TD.
1); in this way, we dealt primarily with young L1 elements [ 23 ] . The TSDfinder program [ 23 37 38 ] was run on the RepeatMasker *.out output files in order to find the TSDs of the L1 elements, thereby refining the L1 boundaries.
We used the RepeatMasker [ 39 ] and TSDfinder [ 23 37 38 ] programs to identify 6,178 L1 elements that had a sequence structure consistent with 3' transduction in a recent build of the human genome.
The peak of nine-nucleotide TSDs, the minimum TSD length allowed by TSDfinder, is likely to be enriched in false positives because they have a relatively low average TSD score of 98; there is obviously a higher likelihood of finding these shorter matches by chance.