Words similar to tsdfinder

Example sentences for: tsdfinder

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the scoring scheme for TSDfinder was revised during its development to assign a scoring penalty to TSDs less than 12 nucleotides long.
Implementation of TSDfinder on a genome-wide scale has provided new insights to a variety of hypotheses about L1 insertion and evolution.
1); in this way, we dealt primarily with young L1 elements [ 23 ] . The TSDfinder program [ 23 37 38 ] was run on the RepeatMasker *.out output files in order to find the TSDs of the L1 elements, thereby refining the L1 boundaries.
In the TSDfinder program [ 33] written in Perl [ 56], L1 coordinates were parsed from the RepeatMasker results in the *.out file.
For each L1 found, the program TSDfinder [ 33] was used to refine the location coordinates in the following ways.