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Example sentences for: tsd

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The classification of an L1 insertion as an L1-TD was only allowed when a 3' TSD closer to the L1, indicating a standard insertion event, could not be found (see [ 23 37 38 ] ). The coordinates of the candidate transduced regions (the gi record and the begin and end coordinates) were stored for later analysis.
When a microhomology existed between the poly(A) tail and the TSD, the microhomologous region was arbitrarily considered part of the TSD by TSDfinder (Figure 1c).
The first and the last 15 nucleotides of the L1 itself are also included in the TSD search to allow for some L1 boundary imprecision.
These families with L1s exhibiting identity in the 5' flank were eliminated from further analysis, as the L1s may represent the same insertion event that was part of a segmental duplication in the genome whose endpoint happened to coincide with the 3' TSD.
These criteria were previously defined by analyzing the DNA sequences that extended from the end of the 3' UTR to the start of the 3' TSD in a random sampling of 25 L1s from the genome that were collected on the basis of having high-confidence TSDs > 14 nucleotides long.