Words similar to subtree-neighbors
Example sentences for: subtree-neighbors
How can you use “subtree-neighbors” in a sentence? Here are some example sentences to help you improve your vocabulary:
In this case, subtree-neighbors are a more reliable source to transfer annotation from.
We introduce and justify three such concepts ("super-orthologs", "ultra-paralogs", and "subtree-neighbors"):
(ii) For query sequences that do have orthologs, absence of overlap between the sequences considered orthologous and those which appear to be subtree-neighbors raises a red flag, indicating that the orthologs are in phylogenetically distant species relative to the query.
An indication of this problem (besides a discrepancy between orthology bootstrap values and sequence similarity) is the meeting of the following three conditions: A query sequence has (i) likely orthologs and (ii) likely subtree-neighbors in other species than the query itself, yet (iii) there is no significant overlap between the orthologs and the subtree-neighbors.
Definition 3. Given a completely binary and rooted gene tree, the k -subtree-neighbors of a sequence q are defined as all sequences derived from the k -level parent node of q , except q itself (the level of q itself is 0, q 's parent is 1, and so forth).