Example sentences for: subtree-neighbors

How can you use “subtree-neighbors” in a sentence? Here are some example sentences to help you improve your vocabulary:

  • A more reasonable annotation for this query would be to annotate it based on subtree-neighbors and hence call it a plant O-methyltransferase.

  • (ii) For query sequences that do have orthologs, absence of overlap between the sequences considered orthologous and those which appear to be subtree-neighbors raises a red flag, indicating that the orthologs are in phylogenetically distant species relative to the query.

  • Definition 3. Given a completely binary and rooted gene tree, the k -subtree-neighbors of a sequence q are defined as all sequences derived from the k -level parent node of q , except q itself (the level of q itself is 0, q 's parent is 1, and so forth).

  • Subtree-neighbors can be useful if there is (partial) agreement among their annotations (for example: if the subtree-neighbors of a query are NAD +-dependent isocitrate dehydrogenase and NADP +-dependent isocitrate dehydrogenase we can suppose that the query is likely to be a isocitrate dehydrogenase, but it is not possible to determine whether it is dependent on NAD +or NADP +).

  • Subtree-neighbors have two uses: (i) If the subtree-neighbors of the query sequence exhibit (partial) agreement in their functional annotations, the elements in which they agree might be used to infer a (partial) function for the query.


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