Example sentences for: subtree-neighbors

How can you use “subtree-neighbors” in a sentence? Here are some example sentences to help you improve your vocabulary:

  • In this case, subtree-neighbors are a more reliable source to transfer annotation from.

  • We introduce and justify three such concepts ("super-orthologs", "ultra-paralogs", and "subtree-neighbors"):

  • (ii) For query sequences that do have orthologs, absence of overlap between the sequences considered orthologous and those which appear to be subtree-neighbors raises a red flag, indicating that the orthologs are in phylogenetically distant species relative to the query.

  • An indication of this problem (besides a discrepancy between orthology bootstrap values and sequence similarity) is the meeting of the following three conditions: A query sequence has (i) likely orthologs and (ii) likely subtree-neighbors in other species than the query itself, yet (iii) there is no significant overlap between the orthologs and the subtree-neighbors.

  • Definition 3. Given a completely binary and rooted gene tree, the k -subtree-neighbors of a sequence q are defined as all sequences derived from the k -level parent node of q , except q itself (the level of q itself is 0, q 's parent is 1, and so forth).


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