Words similar to psi-blast

Example sentences for: psi-blast

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Furthermore, iterative database searches using the PSI-BLAST program [ 9] showed statistically significant sequence similarity between these proteins and an experimentally characterized endo α-1,4-polygalactosaminidase from Pseudomonas species [ 21].
For prediction of protein function, detailed sequence analysis was carried out wherever needed using the PSI-BLAST program [ 78] and the SMART system for protein domain identification [ 85].
Cyanobacterial sequences (not shown in Table 1) are found in the PSI-BLAST output for group 3, but are quite distantly related to the other group 3 sequences (typically less than 20% sequence identity).
Previously known, conserved domains were identified using PSI-BLAST derived profiles for them, with the RPS-BLAST program [ 45 ] . Sequence-structure threading was performed using the 3DPSSM server http://www.sbg.bio.ic.ac.uk/~3dpssm/.
After multiple iterations, a PSI-BLAST search using the E. coli GshB (gi121663) as an initial query sequence found 509 sequences of enzymes in the ATP-grasp superfamily, to which the bacterial enzyme is known to belong, but no eukaryotic GshB sequences.