Words similar to psi-blast

Example sentences for: psi-blast

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Profile searches were conducted using the PSI-BLAST program with either a single sequence or an alignment used as the query, with a profile-inclusion expectation (E) value threshold of e = 0.01, and were iterated until convergence [ 21, 35].
As seen with GshA, PSI-BLAST searches with GshB sequences from either group did not find GshB sequences from the other group.
Multiple alignments were constructed using the T_Coffee program [ 38], followed by manual correction based on the PSI-BLAST results.
Among them, BLAST and PSI-BLAST [ 3] are widely used to assign functions to newly sequenced open reading frames (ORFs) in genome sequence.
To further investigate its evolutionary relationships, we used the sequence of this β-barrel unit from the PRC-H protein (gi: 132177, residues 151-257) of Rhodopseudomonas viridis in a PSI-BLAST [ 21] search of the non-redundant (NR) database at the National Center for Biotechnology Information (NCBI).