Words similar to psi-blast

Example sentences for: psi-blast

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Profile searches were conducted using the PSI-BLAST program with either a single sequence or an alignment used as the query, with a profile-inclusion expectation (E) value threshold of e = 0.01, and were iterated until convergence [ 21, 35].
PSI-BLAST searches seeded with the KilA-N domains from a diverse set of viral and bacterial proteins also consistently recovered fungal transcription factors that are involved in cell-cycle-specific gene expression and filamentation, with E-values of borderline statistical significance (0.
Previously known, conserved domains were identified using PSI-BLAST derived profiles for them, with the RPS-BLAST program [ 45 ] . Sequence-structure threading was performed using the 3DPSSM server http://www.sbg.bio.ic.ac.uk/~3dpssm/.
A PSI-BLAST search was initiated with the conserved N-terminal extension of the SGC (human SGC1β, gi: 4504215, region 1-360), using an inclusion threshold of .01, and compositional bias based statistics to eliminate false positives arising due to peculiarities of sequence composition.
To determine the entire extant of the N1pC/P60 family we initiated PSI-BLAST [ 28] searches of the non-redundant database (expect (E)-value for inclusion in threshold = 0.01, iterated to convergence) with a number of starting points, such as the catalytic domains of B. subtilis LytF (C1wE) and LytE (C1wF), L. monocytogenes P60 and P45 and E. coli N1pC.