Example sentences for: psi-blast

How can you use “psi-blast” in a sentence? Here are some example sentences to help you improve your vocabulary:

  • Among them, BLAST and PSI-BLAST [ 3] are widely used to assign functions to newly sequenced open reading frames (ORFs) in genome sequence.

  • I used BLAST [ 11 ] and PSI-BLAST at the NCBI website to find K +-channel homologs using the Shaker K +-channel pore sequence as a query initially and then other, longer, K +-channel family-specific query sequences for verification.

  • All globular segments of proteins that did not map to domains with previously constructed PSSMs were searched individually using PSI-BLAST to detect any additional domains that may have been overlooked.

  • The PSSMs were prepared by choosing one or more starting queries (seeds) for a set of most frequently encountered domains (see reference [ 28] for details) and run against the NR database until convergence with the -C option of PSI-BLAST to save the PSSM.

  • The protein family retrieved by PSI-BLAST [ 25] consists of 20 unique.


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