Example sentences for: psi-blast

How can you use “psi-blast” in a sentence? Here are some example sentences to help you improve your vocabulary:

  • All complete CYTH domain sequences were aligned using the T_Coffee program, and this alignment was further refined based on the PSI-BLAST HSPs, conserved motifs detected in the Gibbs sampling procedure and predicted secondary structure for the individual groups (Fig.

  • For example, A. thaliana has at least three superfamily members in the PSI-BLAST output, including carbamoyl phosphate synthetase, 3-methylcrotonyl-CoA carboxylase, and acetyl CoA carboxylase.

  • Profile libraries for these templates are generated for use by 123D using PSI-BLAST with a default E-value of 1e-6 and three iterations.

  • Domain architectures together with the results of PSI-BLAST [ 28] searches that were run for three iterations, Entrez protein annotation [ 39] and protein annotations in the COG database [ 5, 40], were used to assign (probable) functions to the selected proteins.

  • The third step generates PSI-BLAST profiles for each input protein sequence against the FOLDLIB sequences.


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