Words similar to psi-blast

Example sentences for: psi-blast

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Among them, BLAST and PSI-BLAST [ 3] are widely used to assign functions to newly sequenced open reading frames (ORFs) in genome sequence.
A PSI-BLAST search started with the N-terminal SBHM from the Aquifex aeolicus DDRP β' subunit detected several SBHMs from proteins other than the β' subunit, such as acetylornithine deacetylase (E = 2 × 10 -7, iteration 2), the C-terminal region of bacterial cytochrome F (E = 10 -4, iteration 2), biotin carboxyl carrier domain of biotin transcarboxylases (E = 6 × 10 -4, iteration 2) and the phosphotransferase system enzyme II (E = 10 -3, iteration 2).
The protein family retrieved by PSI-BLAST [ 25] consists of 20 unique.
Multiple alignments were constructed using the T_Coffee program [ 41 ] , followed by manual correction based on the PSI-BLAST results.
Profile libraries for these templates are generated for use by 123D using PSI-BLAST with a default E-value of 1e-6 and three iterations.