Words similar to psipred

Example sentences for: psipred

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As an example, a profile seeded with the MBP1p APSES domain and including all APSES domains in the NR database detects the N. meningitidis protein NMA1544 (gi:11290039) with an E-value of 0.1 in iteration 3. Given the availability of the three-dimensional structure of the APSES domain of the MBP1p protein [ 16, 17], we investigated this potential relationship using the KilA-N domain sequences for sequence-structure threading of the PDB database with the 3DPSSM, PSIPRED and combined-fold prediction algorithms.
We initially start with an all-atom conformation where the torsion values for residues predicted to be in helix/sheet by PSIPRED secondary structure prediction [ 38 ] are set to idealised values [ 33 ] . The remaining φ/ψ values are set in an extended conformation.
Both 3DPSSM and PSIPRED gave hits (E-value approximately 0.05 for 3DPSSM and probability of matching approximately 0.8 for PSIPRED) that implied a 90% certainty of the KilA-N domain adopting the same fold as the APSES domain (PDB 1bm8/1bm1).