Words similar to psiblast

Example sentences for: psiblast

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Genomic cross-networking with PSIBLAST
A PSIBLAST search, using huAPE1 as the founder sequence, with an e-value of 0.1 per iteration, did not converge after 6 iterations, but few new sequences were added in the last 2 cycles.
Kir7 was selected because it is the Kir subfamily most distant from the other Kir subfamilies, as indicated in Table 1. Of the different K +channel families, KirBac's were found to be most similar to the Kir superfamily in the PsiBlast searches primarily because of the homology of their similar, relatively long C-terminal sequences following the M2 segments.
PSIBLAST alignments and other publicly available servers such as GenTHREADER [ 27 ] and SAM-T99 [ 28 ] , available as part of the CAFASP meta-server [ 29 ] , were also used to generate a variety of choices for alignments.
The methodology can be used to complement searches with programs such as PSIBLAST and PROSITE [ 41 ] to detect distantly related functional or structural homologues in sequences revealed by genome sequencing.