Words similar to psiblast

Example sentences for: psiblast

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We used several multisequence alignment methods (PsiBlast [ 6 ] , Clustal W 1.74 [ 7 ] , Pileup of the GCG package [ 8 ] ) to initially align KirBac with eukaryotic Kir sequences accessible in public databases.
PSIBLAST searches often reveal areas of local similarity in proteins that have no significant overall sequence identity.
PSIBLAST alignments and other publicly available servers such as GenTHREADER [ 27 ] and SAM-T99 [ 28 ] , available as part of the CAFASP meta-server [ 29 ] , were also used to generate a variety of choices for alignments.
Kir7 was selected because it is the Kir subfamily most distant from the other Kir subfamilies, as indicated in Table 1. Of the different K +channel families, KirBac's were found to be most similar to the Kir superfamily in the PsiBlast searches primarily because of the homology of their similar, relatively long C-terminal sequences following the M2 segments.
The methodology can be used to complement searches with programs such as PSIBLAST and PROSITE [ 41 ] to detect distantly related functional or structural homologues in sequences revealed by genome sequencing.