Words similar to psiblast

Example sentences for: psiblast

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Genomic cross-networking with PSIBLAST
Sequence searches were performed with the web-based programs Blast and PsiBlast at http://www3.ncbi.nlm.nih.gov/BLAST/for sequences that were deposited in data bases and by tblastn at http://www.ncbi.nlm.nih.gov/MicrobJ3last/unfinishedgenome.htmlfor unpublished microbial sequences.
PSIBLAST alignments and other publicly available servers such as GenTHREADER [ 27 ] and SAM-T99 [ 28 ] , available as part of the CAFASP meta-server [ 29 ] , were also used to generate a variety of choices for alignments.
We used several multisequence alignment methods (PsiBlast [ 6 ] , Clustal W 1.74 [ 7 ] , Pileup of the GCG package [ 8 ] ) to initially align KirBac with eukaryotic Kir sequences accessible in public databases.
A PSIBLAST search, using huAPE1 as the founder sequence, with an e-value of 0.1 per iteration, did not converge after 6 iterations, but few new sequences were added in the last 2 cycles.