Words similar to pdp

Example sentences for: pdp

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Whereas other resources are limited to what is present in PDB or SCOP, PAT provides additional domains from PDP, and genetic domains from Astral.
In addition to the domains from SCOP, we have included domains parsed using the protein domain parser (PDP) [ 15 ] , full-length Protein Data Bank (PDB) chains and chains not classified by SCOP, but associated with SCOP using combinatorial extension (CE), a structural-similarity search algorithm [ 16 ] . The result is a comprehensive fold library (FOLDLIB) from which comparative and fold recognition models of three-dimensional structure are derived.
The sequences from SCOP, PDB, and PDP are then clustered at 90% identity to define the final structure-template library.
SCOP domain sequences filtered at 90% identity [ 26 ] are downloaded from the Astral database [ 27 ] . PDB chains are clustered at 90% identity and parsed with PDP [ 15 ] to provide additional domains, including those not yet assigned by SCOP.
The 'pseudo SCOP entry by PAT' is a novel domain parsed by PDP, which at the time was not in SCOP release 1.55.