Example sentences for: pdp

How can you use “pdp” in a sentence? Here are some example sentences to help you improve your vocabulary:

  • SCOP domain sequences filtered at 90% identity [ 26 ] are downloaded from the Astral database [ 27 ] . PDB chains are clustered at 90% identity and parsed with PDP [ 15 ] to provide additional domains, including those not yet assigned by SCOP.

  • In addition to the domains from SCOP, we have included domains parsed using the protein domain parser (PDP) [ 15 ] , full-length Protein Data Bank (PDB) chains and chains not classified by SCOP, but associated with SCOP using combinatorial extension (CE), a structural-similarity search algorithm [ 16 ] . The result is a comprehensive fold library (FOLDLIB) from which comparative and fold recognition models of three-dimensional structure are derived.

  • The sequences from SCOP, PDB, and PDP are then clustered at 90% identity to define the final structure-template library.

  • Whereas other resources are limited to what is present in PDB or SCOP, PAT provides additional domains from PDP, and genetic domains from Astral.

  • The 'pseudo SCOP entry by PAT' is a novel domain parsed by PDP, which at the time was not in SCOP release 1.55.

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