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Example sentences for: meme

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We had previously shown by methylation interference analysis that KRC/ZAS-C bound specifically to the sequence TGTGG within the context of the canonical RSS heptamer plus the immediately flanking guanine [ 14 ] . Because the pentamer motif for KRC/ZAS-C predicted by MEME completely matched with the empirical results, we conclude that the two pentameric motifs discovered by MEME are likely authentic binding sites for KRC/ZAS-N as well.
The human and mouse genomes in the GenBank databases were searched with the KRC-bound sequences identified as PSSMs by the MEME program with the Multiple Alignment Search Tool (MAST).
We used the MEME system, version 3.0 [ 24, 25] to look for core promoter motifs using a motif width range of 5-15 bp and zero or one occurrence per sequence.
The 10 most statistically significant motifs found by this method are listed in Table 2, and their location distributions within the sequences that MEME used in its alignments are shown in Figure 1. Well-known motifs such as the TATA box and Inr are readily found (the third and fourth most significant motifs in Table 2).
Among the 354 motifs with scores higher than 700, we observed no motifs that were unrelated to the ten most significant motifs found by MEME (Table 2).