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Example sentences for: meme

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Representative results of passes of MEME with W = 9 nucleotides are presented in Figures 5, 6, 7, 8, 9. In those passes, two PSSMs were discovered in the ZAS-N dataset.
Sequence analysis was performed using the computer programs MEME (version 3.0) [ 30 ] and MAST (version 3.0) [ 34 ] . The data of both programs were processed on the Cray T3E supercomputer at the San Diego Supercomputer Center accessed through the Internet: MEME http://www.sdsc.edu/meme.
The MEME program aims at generating motifs with the most probable occurrence, and the length of a motif may override other parameters in the algorithm.
Using the ZAS-N- and ZAS-C-selected DNA sequences as input, the MEME program discovered motifs containing sequences similar to the κB or Sb transcriptional enhancer motifs as well as the conserved heptamer or nonamer elements of the RSS.
We therefore used an implementation adapted to DNA sequence analysis that we could install locally [ 28] to analyze sequences from -60 to +40 in the same set of promoters used with MEME.