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Example sentences for: meme

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A motif of 25-nucleotides was obtained in the above MEME analysis when widths of ≥ 6 W ≤ 25 nucleotides were set.
The first pass of MEME for ≥ 6 W ≤ 25 nucleotides generated a single 25-mer TG-rich motif found in all 53 sequences in the ZAS-N-dataset (Fig 3).
Generally, the significance of the llr and E-values scores of a motif generated by MEME increased with its length whereas the information content per nucleotide position decreased (Figures 3, 4, 5, 6, 7, 8, 9, 10, 11, 12).
For MAST, only MEME PSSMs with an E-value < 1 were presented, and the reverse complement DNA strand was considered with the forward orientation in the search.
Because different algorithms for detecting overrepresented motifs have different properties (see Materials and methods), we compared the motifs identified using a Gibbs sampling algorithm [ 27, 28] with those identified by MEME.