Words similar to meme

Example sentences for: meme

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Using the ZAS-N- and ZAS-C-selected DNA sequences as input, the MEME program discovered motifs containing sequences similar to the κB or Sb transcriptional enhancer motifs as well as the conserved heptamer or nonamer elements of the RSS.
The human and mouse genomes in the GenBank databases were searched with the KRC-bound sequences identified as PSSMs by the MEME program with the Multiple Alignment Search Tool (MAST).
MEME analyzes input sequences for similarities and produces a PSSM or motif for each pattern it discovers [ 30 ] . We set the parameters of MEME as follows: (i) zero or one occurrences of a single motif per sequence; (ii) five as the maximum number of motifs to identify; (iii) 5 to 25 nucleotides as the range of motif size; and (iv) both DNA strands as input.
The MEME program aims at generating motifs with the most probable occurrence, and the length of a motif may override other parameters in the algorithm.
In our analysis, passes of MEME where the width was not set to a fixed length but to a given range of nucleotides always yielded the longest motif.