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Example sentences for: meme

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The program MEME [ 56] was seeded with the most significant 6-mer (CGCGAA) enriched in the promoters of the genes selected for cluster 61, and the program was run with a variety of parameters (the parameters and MEME output can be found at [ 14]).
We therefore used an implementation adapted to DNA sequence analysis that we could install locally [ 28] to analyze sequences from -60 to +40 in the same set of promoters used with MEME.
We next looked for over-represented motifs using the MEME system to analyze the core promoter regions from -60 to +40 on the leading strand ([ 24, 25] and see Materials and methods).
Among the 354 motifs with scores higher than 700, we observed no motifs that were unrelated to the ten most significant motifs found by MEME (Table 2).
Motif discovery by MEME: ≥ 6 W ≤ 15 nucleotides