Words similar to meme

Example sentences for: meme

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In a final experiment, we ran MEME on both strands of the entire 300-bp core promoter regions.
Representative results of passes of MEME with W = 9 nucleotides are presented in Figures 5, 6, 7, 8, 9. In those passes, two PSSMs were discovered in the ZAS-N dataset.
For MEME, the free parameters of the analysis were set as the following: (i) the occurrences of a single motif distributed among the sequences were zero or one per sequence; (ii) the maximum number of motifs to find was five; (iii) the optimum width of each motif ranged from 3 to 25 nucleotides; and (iv) both strands of DNA were searched.
To try and identify novel sequences conserved in these promoters, we used the motif-finding algorithm MEME [ 56], initializing the EM algorithm with the most significantly enriched 6mer for the cluster.
We therefore used an implementation adapted to DNA sequence analysis that we could install locally [ 28] to analyze sequences from -60 to +40 in the same set of promoters used with MEME.