Words similar to megablast

Example sentences for: megablast

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The MEGABLAST tool [ 17] was used to identify the approximate genomic coordinates for each UniGene cluster (for example, the contig on which a given gene appeared to be located).
MEGABLAST parameters were set to take advantage of the lower-case masking, which allows for alignment extension (but not alignment seeding) through lower-case masked sequences.
The approximately 1 Mb (1,008,705 base-pairs (bp)) interval encompassing the entire pericentric inversion breakpoint interval and the adjacent unique (that is, present on only one chromosome arm in PTR) FISH probes was extracted from the November 2002 human genome assembly and compared to the entire genome using MEGABLAST.
For efficient MEGABLAST analysis, the human genome sequence is fragmented into 400 kb pieces, each chromosome is fractioned separately and each fragment labeled consecutively from p-telomere to q-telomere.
To assess the quality of directional cloning in EST libraries, we applied the MEGABLAST tool [ 17] to align ESTs to the BOU of the UniGene cluster to which they belonged.