Words similar to megablast

Example sentences for: megablast

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The approximately 1 Mb (1,008,705 base-pairs (bp)) interval encompassing the entire pericentric inversion breakpoint interval and the adjacent unique (that is, present on only one chromosome arm in PTR) FISH probes was extracted from the November 2002 human genome assembly and compared to the entire genome using MEGABLAST.
For efficient MEGABLAST analysis, the human genome sequence is fragmented into 400 kb pieces, each chromosome is fractioned separately and each fragment labeled consecutively from p-telomere to q-telomere.
The MEGABLAST tool [ 17] was used to identify the approximate genomic coordinates for each UniGene cluster (for example, the contig on which a given gene appeared to be located).
The MEGABLAST output was parsed into tab-delimited text and displayed using the graphical alignment display program Parasight (Jeff Bailey, unpublished work).
To assess the quality of directional cloning in EST libraries, we applied the MEGABLAST tool [ 17] to align ESTs to the BOU of the UniGene cluster to which they belonged.