Example sentences for: megablast

How can you use “megablast” in a sentence? Here are some example sentences to help you improve your vocabulary:

  • The MEGABLAST tool [ 17] was used to identify the approximate genomic coordinates for each UniGene cluster (for example, the contig on which a given gene appeared to be located).

  • For efficient MEGABLAST analysis, the human genome sequence is fragmented into 400 kb pieces, each chromosome is fractioned separately and each fragment labeled consecutively from p-telomere to q-telomere.

  • We extracted the 1 Mb interval from the November 2002 human genome assembly and performed a sequence-similarity search against the entire human genome (build 31 (Figure 4) and the non-redundant nucleotide (NT) and high throughput genomic sequence (HTGS) databases (data not shown)) using MEGABLAST.

  • B6 sequences were retrieved from the mmtrace database at NCBI using a MegaBLAST search, and D2 sequences were retrieved from Celera by BLAST search of the All Mouse Fragments (masked) database.

  • MEGABLAST parameters were set to take advantage of the lower-case masking, which allows for alignment extension (but not alignment seeding) through lower-case masked sequences.


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