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Example sentences for: gibbs

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Conserved motifs were searched for using the Gibbs sampling procedure.
The alignment between these bacterial proteins and the eukaryotic Rad52 homologs was co-linear throughout the entire length of their shared globular region and the Gibbs sampling procedure detected two motifs of greater than 20 residues, with a probability of chance occurrence in these proteins less than 10 -18(Fig.
As with other implementations of Gibbs sampling, this implementation [ 28] does not automatically estimate the width of motifs, which we fixed at 10 bases.
To decide whether Gibbs derived motifs matched known ones we ran the known weight matrices in both orientations over the individual sequences composing the motif plus five flanking bases and computed the position that maximized the information score.
Both Ahab and Gibbs, use counts of short strings or single bases, within the window of interest to compute the significance of longer motifs.