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Example sentences for: dpbb

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In contrast, the FDHC-like DPBB domain associated with oxidoreductases, such as formate dehydrogenase and molybdopterin-containing dehydrogenases, is widespread in archaea and all major lineages of free-living bacteria.
In the crystal structure of DDRP, the SBHM domain inserted into the β-subunit DPBB is in contact with the outward-projecting insert between strands 2 and 3 of the β'-subunit DPBB.
The AT-hook is a simple, small protein module that consists of a flap-like structure with a positively charged surface that is inserted into the minor groove of DNA [ 74 ] . The two AT-hook-like modules (residues 583-603 of 1IW7 chain D) in the DDRP β' subunit are inserted within the α-helix that is located immediately upstream of the DPBB domain (Fig.
Nevertheless, a structural alignment based on visual inspection confirms the presence of all the bona fide features of the DPBB domain in the β subunit (Fig.
The region of structural similarity shared by the catalytic domain of the β' subunit of the DDRPs and the above proteins corresponds to a distinct globular fold known as the double-psi beta-barrel (DPBB) [ 62 63 64 ] . The SCOP database included the RNA polymerase subunits in the multidomain protein class but mentions the presence of a DPBB domain in each of the β and β' subunits ( [ 65 ] ; see below).