Words similar to clustalx

Example sentences for: clustalx

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A tree was generated from aligned sequences using ClustalX's Draw Neighbor Joining (NJ) Tree program.
The overall alignment of the midasin M-domain from humans, yeast and Giardia with other MIDAS-containing proteins (three Mg-chelatases and the I-domains of three integrins) was created by first aligning the midasins, Mg-chelatases and integrins separately with the program T-Coffee [ 58 ] . The resultant three partial alignments were then combined by the profile alignment procedure of ClustalX, as above.
ClustalX [ 4 ] uses the ClustalW algorithm [ 5 ] to align sequences using a combination of progressive alignment and dynamic programming, making this algorithm sensitive to divergence between closely related sequences (<35% identity).
The FastGroup 8 contain sequences that differ from FastGroup 1 by a one bp gap, which explains the reason that ClustalX placed these sequences in Clade 1. Because this gap occurred in all four FastGroup 8 sequences, and not in any of the FastGroup 1 sequences, these two groups probably represent different 16S rDNAs and possibly two bacterial species.
The NJ tree from the ClustalX analysis is shown in Figure 3. The groups from FastGroup are color coded on the Tree (Figure 3).