Example sentences for: clustal

How can you use “clustal” in a sentence? Here are some example sentences to help you improve your vocabulary:

  • Sequences were aligned using CLUSTAL X 1.8 [ 45 ] . The number of substitutions per site in the aligned data set were calculated using a JAVA program written by Olga Zhaxybayeva (University of Connecticut).

  • It was able to identify multiple motifs that could not be recognized by other alignment programs, such as Pileup (GCG Software Package, [ 47 ] ) or Clustal W [ 48 ] which have been used in other site-selection experiments to identify a single consensus sequence.

  • Parameters for CLUSTAL alignments were: Pairwise alignment: Ktuple, 1; gap Penalty, 3; windows, 5; diagonals saved, 5. Multiple alignment: gap penalty, 10; gap length penalty, 10.

  • We favor the loop location predicted by Clustal W because indels are more likely to occur in loops than within transmembrane helices.)

  • Advantages of the Clustal X approach is that visual confirmation of grouping is easy.


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