Words similar to clustalw

Example sentences for: clustalw

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Multiple alignments of amino-acid sequences were carried out using CLUSTALW computer algorithms [ 23 ] . The aligned sequences were further analysed, either by the distances method (Neighbor-Joining program) or by the parsimony method (Protpars program, not shown).
The amino acid sequences for each QuartOP were retrieved from GenBank at NCBI and were aligned using ClustalW 1.8 [ 53 ] . QuartOPs were analyzed using the ML-mapping approach according to Strimmer and von Haeseler, Bayesian probabilities mapping and bootstrap support values mapping techniques (see details below).
Symmetrical best hits in these BLAST searches (expectation value ≤ 10 -3) were taken to be orthologs [ 20 ] . Pairs of orthologous proteins were aligned using the ClustalW program [ 21 ] and their substitution (evolutionary) rates were calculated using the gamma distance correction [ 22 ] . The data on protein-protein interactions for the
Individual fragments were assembled to longer contigs using multiple alignment tools such as ClustalW [ 11 ]
The phylogenetic distances between various TMC protein sequences were calculated with ClustalW [ 11 ] http://www.es.embnet.org/Doc/phylodendron/clustal-form.htmland the resulting distance matrix Additional file: 1 (A)was visualized as a tree diagram with centered node position using the Phylodendron phylogenetic tree printer available at http://iubio.bio.indiana.edu/treeapp.