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Example sentences for: clustalw

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The amino acid sequences for each QuartOP were retrieved from GenBank at NCBI and were aligned using ClustalW 1.8 [ 53 ] . QuartOPs were analyzed using the ML-mapping approach according to Strimmer and von Haeseler, Bayesian probabilities mapping and bootstrap support values mapping techniques (see details below).
ClustalW [ 11 ] was used for multiple sequence alignment.
Draw N-J Tree and Bootstrap N-J commands of ClustalW were then used to generate non-bootstrapped and bootstrapped trees, respectively.
Multiple alignments of amino acid sequences were generated using a combination of PSI-BLAST, CLUSTALW [ 24] and secondary structure predictions that were produced using the PHD program [ 25] and the PSI-PRED program [ 26], with multiple alignments of individual protein families used as queries.
Fusion proteins were aligned (ClustalW) with one another and with the assemblage of free-standing proteins corresponding to the amino-terminal and the carboxy-terminal domains of the fusion proteins.