Example sentences for: alignments

How can you use “alignments” in a sentence? Here are some example sentences to help you improve your vocabulary:

  • Close inspection of the sequence alignments showed no variation among high confidence regions of the sequence where high confidence regions means at least 40-50 nucleotides from the end of the read or with few unassigned base calls near the region.

  • Further visual examination and structural alignments revealed the presence of one additional SBHM domain in the β subunit (1iw7 chain C: region 592-659) and several repeats of this domain in the β' subunit (1iw7 chain D, regions: 163-195, 248-308, 311-368, 369-419 and 1270-1329) of the bacterial DDRPs (Fig.

  • 5b, that were colored according to results of alanine and tryptophan scanning experiments [ 12 ] . These similarities of residue conservation patterns between Kir's and the other families do not match as well for most other alignments between Kir's and the other families.

  • Similar tree topologies were obtained when the ribosomal protein data were analyzed using the neighbor-joining method and when bacterial phylogeny was analyzed separately by using a concatenated alignments of 51 ribosomal proteins shared by all bacteria (data not shown).

  • We use the Pfam protein family database [ 8 ] as a source of high quality curated multiple sequence alignments and profile HMMs (Hidden Markov Models, see [ 21 ] for a review), as well as programs from the HMMER package http://hmmer.wustl.edu/.


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