Words similar to alignments
Example sentences for: alignments
How can you use “alignments” in a sentence? Here are some example sentences to help you improve your vocabulary:
The sequence of this linker domain is moderately well conserved among organisms, with 13-19% identity and 26-34% similarity in pairwise alignments of the yeast sequence with those of human and Giardia (Table 1).
The overall alignment of the midasin M-domain from humans, yeast and Giardia with other MIDAS-containing proteins (three Mg-chelatases and the I-domains of three integrins) was created by first aligning the midasins, Mg-chelatases and integrins separately with the program T-Coffee [ 58 ] . The resultant three partial alignments were then combined by the profile alignment procedure of ClustalX, as above.
A RIO procedure based on Pfam alignments analyzes each protein domain individually since Pfam is protein family database based on individual domains [ 8 ] . In some respects, it would be preferable to analyze whole protein sequences, but well curated databases of complete protein alignments are not available (to our knowledge).
Gaps in the contigs were closed by a combination of DNA sequence alignments of BESs with HTGS data, clone walking using RNA probes from end clones to hybridize to the RPCI-11 gridded filters, and verification of clone positions by PCR for STSs.
RIO can easily be adapted to work with different sources of alignments and different alignment programs.