Example sentences for: pssms

How can you use “pssms” in a sentence? Here are some example sentences to help you improve your vocabulary:

  • As a control, several sets of 50 random 25-mers were generated by a random number generator (G = 1, A = 2, T = 3, C = 4) and none yielded any statistically significant PSSMs (where E-values <1.

  • The PSSMs were prepared by choosing one or more starting queries (seeds) for a set of most frequently encountered domains (see [ 34] for details) and run against the NR database until convergence with the -C option of PSI-BLAST to save the PSSM.

  • Furthermore, we were able to align the κB motif, the Sb sequence, the RSS nonamer, and part of the RSS heptamer "TGTG" with both PSSMs (Figs.

  • The computer program Multiple Alignment Sequence Tool (MAST version 3.0) [ 34 ] was used to search human and mouse genome databases for DNA elements matching the KRC-selected PSSMs.

  • The National Center for Biotechnology Information (NCBI) maintains a Conserved Domain Database (CDD) that uses PFAM and SMART [ 11 ] domain PSSMs to detect possible structural homologs.


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