Words similar to pssms

Example sentences for: pssms

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The PSSMs were prepared by choosing one or more starting queries (seeds) for a set of most frequently encountered domains (see [ 34] for details) and run against the NR database until convergence with the -C option of PSI-BLAST to save the PSSM.
Furthermore, we were able to align the κB motif, the Sb sequence, the RSS nonamer, and part of the RSS heptamer "TGTG" with both PSSMs (Figs.
The 3D-Genomics database [ 12 ] uses SCOP domain PSSMs from 3D-PSSM [ 13 ] . Gene3D uses the CATH domain classification to annotate genes and genomes [ 14 ] .
All globular segments of proteins that did not map to domains with previously constructed PSSMs were searched individually using PSI-BLAST to detect any additional domains that may have been overlooked.
The computer program Multiple Alignment Sequence Tool (MAST version 3.0) [ 34 ] was used to search human and mouse genome databases for DNA elements matching the KRC-selected PSSMs.