Words similar to pssm

Example sentences for: pssm

How can you use “pssm” in a sentence? Here are some example sentences to help you improve your vocabulary:

MEME analyzes input sequences for similarities and produces a PSSM or motif for each pattern it discovers [ 30 ] . We set the parameters of MEME as follows: (i) zero or one occurrences of a single motif per sequence; (ii) five as the maximum number of motifs to identify; (iii) 5 to 25 nucleotides as the range of motif size; and (iv) both DNA strands as input.
The PSSMs were prepared by choosing one or more starting queries (seeds) for a set of most frequently encountered domains (see reference [ 28] for details) and run against the NR database until convergence with the -C option of PSI-BLAST to save the PSSM.
We were able to align the canonical RSS nonamer and Sb with this PSSM.
E -values less than 7. Thus, the PSSM was very effective at discriminating between GshA and non-GshA sequences in the database.
However, despite extensive comparisons using PSSM and careful visual examination, we failed to detect any residual sequence similarity between DDRP and RDRP, outside the core DPBB domain containing the metal-binding active site.