Words similar to position-specific

Example sentences for: position-specific

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A search of the non-redundant database using a PSSM (position-specific scoring matrix) generated from these blocks retrieved a total of 81 sequences with E -values less than 10.
We prepared a multiple alignment of these regions from all the proteins detected in these searches (Figure 1) and used it to construct a PSI-BLAST position-specific score matrix (PSSM) [ 34] and a hidden Markov model [ 35] for further searches against the complete or nearly complete proteome databases of individual eukaryotes.
Sequence-structure threading was carried out using the combined-fold-prediction algorithm [ 22] or the 3D-PSSM algorithm based on the use of a three-dimensional position-specific scoring matrix [ 23].
Previously known conserved protein domains were detected using the corresponding position-specific scoring matrices (PSSMs) constructed using PSI-BLAST [ 40].
Additionally, a search of the NR database with a position-specific scoring matrix (PSSM) that included all unique RDRP and YRH sequences detected, with borderline E-values, a large protein from Corynebacterium glutamicum (Cgl1702), which also contained a DXDGD motif.