Words similar to paup

Example sentences for: paup

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A bootstrap method of PAUP.
Simulation studies have shown that ML is typically more accurate and robust than MP [ 81 82 ] . Thus an ML analysis of the data was conducted by employing an heuristic search in PAUP* using TBR branch swapping on a starting tree based on neighbor joining, ACCTRAN, and STEEPEST DESCENT under the TrN+G DNA substitution model [ 83 ] . This model was selected using a Hierarchical Likelihood Ratio Test (HLRT) in Modeltest version 3.06 [ 84 ] .
MP analyses were performed using the software PAUP* 4.0 [ 78 ] , assuming unordered character states and equal character state weighting.
Using ScSMY1, a highly divergent kinesin [ 25], as an outgroup, the motor domain sequences of the 61 Arabidopsis kinesins and 113 kinesins from other organisms were analyzed for phylogenetic relationships using PAUP [ 44] (Figures 3and 4).
Phylogenetic trees were generated using PAUP 4.0b7 [ 14 ] . In order to assess the relative contribution of chromosomal inversion and DNA sequence data we placed our analysis in a simultaneous analysis framework [ 15 16 17 ] . Bootstrap values were computed using PAUP 4.0b7.