Words similar to paup

Example sentences for: paup

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Bootstrap samples were analyzed using parsimony as implemented in PAUP* 4.0 beta 8 [ 47 ] treating gaps as missing data.
The analysis reached stationarity at 2500 generations, and these burnin samples were excluded from the majority rule consensus tree of 97,500 samples, which was generated with PAUP* to obtain the Bayesian posterior probabilities.
Phylogenic analyses of both DNA and amino acid sequences were performed using PAUP* [ 23 ] . In this study Cpn 0186 (IncA), and four additional candidate inclusion membrane proteins, Cpn 0284, Cpn 0285, Cpn 0829 and Cpn 0830, were selected as members of an outgroup for analysis.
Simulation studies have shown that ML is typically more accurate and robust than MP [ 81 82 ] . Thus an ML analysis of the data was conducted by employing an heuristic search in PAUP* using TBR branch swapping on a starting tree based on neighbor joining, ACCTRAN, and STEEPEST DESCENT under the TrN+G DNA substitution model [ 83 ] . This model was selected using a Hierarchical Likelihood Ratio Test (HLRT) in Modeltest version 3.06 [ 84 ] .
Microsoft-Word file of aligned data matrix used for phylogenetic analyses in PAUP*.