Words similar to paup

Example sentences for: paup

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Simulation studies have shown that ML is typically more accurate and robust than MP [ 81 82 ] . Thus an ML analysis of the data was conducted by employing an heuristic search in PAUP* using TBR branch swapping on a starting tree based on neighbor joining, ACCTRAN, and STEEPEST DESCENT under the TrN+G DNA substitution model [ 83 ] . This model was selected using a Hierarchical Likelihood Ratio Test (HLRT) in Modeltest version 3.06 [ 84 ] .
MP analyses were performed using the software PAUP* 4.0 [ 78 ] , assuming unordered character states and equal character state weighting.
Phylogenetic analysis was performed by using the PAUP 4.0 program [ 39 ] , with 1000 bootstrap replicates performed to assess the reliability of the tree topology.
Similar findings were obtained using the neighbor-joining method in PAUP.
The alignment was saved as a PAUP file and the phylogenetic analysis was done using PAUP 4.0b4a (PPC).