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Example sentences for: orfs

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When a given pair receives a score above a (user-specified) cut-off, an output record is generated that specifies salient information about the putative element, such as the length of the transposon and its LTRs, its position within the contig, an alignment of its LTRs, the nucleotide sequence of the transposon, its LTRs and target-site repeats, as well as a file listing all ORFs.
An analysis of the putative functional assignments of the QuartOPs that grouped Halobacterium sp. with the mesophilic bacteria is given in Table 4. To assess which of these categories have an increased percentage of QuartOPs as compared to distribution of ORFs within the genome, we also calculated the distributions of ORFs among functional categories in the Halobacterium sp. and A. fulgidus genomes.
Human genomic DNA was amplified by polymerase chain reaction (PCR) usinq Taq polymerase (HotStarTaq, Qiagen) and oligonucleotide primers based on sequences corresponding to the extreme amino- and carboxy-terminal parts of OR ORFs.
Eighty-three clones encode ORFs that are truncated at their carboxy-termini and are most likely the result of priming from internal poly(A) tracts.
While there are a number of Drosophila genes encoding functional ORFs of this size, it is also possible that these transcripts do not encode a functional protein but rather function at the RNA level to affect life span.