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Example sentences for: nhx

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The RIO output for the A. thaliana protein F12M16_14 analyzed against the ldh domain alignment is shown as an example in Figure 7. The results are summarized in Tables 2and 3. Complete RIO output files (as well as NHX [ 33 ] tree files) are avaliable, herefor A. thaliana and at herefor c.elegans . In all cases, distinction between malate dehydrogenase (NAD) and lactate dehydrogenase is unquestionable and in accordance with existing annotations and BLAST results irrespective which domain (ldh or ldh_C) was used for the RIO analysis (which implies that no domain swapping occurred over long evolutionary times).
The tree is available in NHX format [ 33 ] at http://www.genetics.wustl.edu/eddy/forester/tree_of_life_bin_1-4.nhx.