Example sentences for: hmmer

How can you use “hmmer” in a sentence? Here are some example sentences to help you improve your vocabulary:

  • A curated multiple alignment A from the Pfam database for the protein family that Q belongs to (as determined by hmmpfam from the HMMER package).

  • Obviously, one can assign Pfam-A domains using the HMMer software [ 29], which they are closely associated with.

  • Alignment of the query sequence is done programs from the HMMER package http://hmmer.wustl.edu/.

  • We use the Pfam protein family database [ 8 ] as a source of high quality curated multiple sequence alignments and profile HMMs (Hidden Markov Models, see [ 21 ] for a review), as well as programs from the HMMER package http://hmmer.wustl.edu/.

  • These programs, with the exception of HMMER, are part of the FORESTER package and are available under the GNU license at http://www.genetics.wustl.edu/eddy/forester/.


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