Words similar to hmmer

Example sentences for: hmmer

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In contrast, analyses using profile search algorithms such as HMMER http://hmmer.wustl.edu/and Pfam [ 8 ] classify sequences too generally.
The program hmmpfam (version 2.2 g) from the HMMER package was used to search each protein sequence in ATH1.pep.
Sequence-profile searches were carried out using the PSI-BLAST program, with the cut-off for inclusion of sequences into the profile set at E = 0.01 [ 3, 9], and the HMMer program package [ 57].
We use the Pfam protein family database [ 8 ] as a source of high quality curated multiple sequence alignments and profile HMMs (Hidden Markov Models, see [ 21 ] for a review), as well as programs from the HMMER package http://hmmer.wustl.edu/.