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Example sentences for: hmms

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This requires specially prepared Pfam full alignments and profile HMMs that are created with the HMMER software as follows:
We use the Pfam protein family database [ 8 ] as a source of high quality curated multiple sequence alignments and profile HMMs (Hidden Markov Models, see [ 21 ] for a review), as well as programs from the HMMER package http://hmmer.wustl.edu/.