Words similar to genepix

Example sentences for: genepix

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Microarrays were scanned in both Cy3 and Cy5 channels with an Axon GenePix scanner (Foster City, CA) with a 10 μm resolution.
Processed arrays were scanned using an GenePix Scanner (Axon Instruments, Foster City, CA); array images were acquired using the Motorola CodeLink™ Analysis Software (Amersham Biosciences, Piscataway, NJ).
The Cy5/Cy3 ratio for each array element was calculated using GENEPIX PRO 4.0, log 2 transformed, and normalized using the default computed normalization method used by the Stanford Microarray Database [ 23 ] . We applied a high stringency data selection, keeping only microarray elements for which at least 80% of the measurements within a set of experiments had fluorescence intensity in both channels at least 3-fold over background intensity.
After several washes, microarrays were scanned with a GenePix microarray scanner (Axon Instruments) and were analyzed with either Scanalyze or Genepix software.
All probes on these microarrays are 30-mer oligonucleotides spotted by piezoelectric technologies and covalently attached to a polymeric matrix [ 6 ] . These microarrays were hybridized, washed, and processed using a direct detection method of the biotin-containing transcripts by a Streptavidin-Alexa647 conjugate as previously described [ 6 ] . Processed slides were scanned using an Axon GenePix Scanner with the laser set to 635 nm, a PMT voltage of 600, and a scan resolution of 10 microns.