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Example sentences for: genemark

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Finally, alignment of protein sequence to genomic DNA cannot predict untranslated regions (UTRs), and the leading ab initio gene prediction programs (Genscan [ 11], GlimmerM [ 12], Genemark.HMM [ 13]) have great difficulty predicting UTRs; most of them predict only the coding portion of a transcript.
Two gene prediction programs were used FGENESH http://www.softberry.com/berry.phtmland GENEMARK http://opal.biology.gatech.edu/GeneMark/eukhmm.cgi?org=H.sapiens.
2 kb plasmid, pXO2, that is required to cause the disease anthrax [ 1 ] . Complete sequencing and annotation (GeneMark.hmm) of pXO2 predicted 85 open reading frames (ORFs) [Genbank accession NC_002146].