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Example sentences for: dpssm

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Additionally, fold predictions using 3DPSSM (E-value=.
Fold predictions were done using the 3-D position specific score matrix (3DPSSM) [ 43 ] and the Hybrid fold method [ 44 ] . Phylogenetic analysis was carried out using the neighbor-joining algorithm, with subsequent local rearrangements using the maximum likelihood algorithm [ 45 ] . The robustness of tree topology was assessed with 10000 Resampling of Estimated Log Likelihoods (RELL) bootstrap replicates.
Previously known, conserved domains were identified using PSI-BLAST derived profiles for them, with the RPS-BLAST program [ 45 ] . Sequence-structure threading was performed using the 3DPSSM server http://www.sbg.bio.ic.ac.uk/~3dpssm/.
Additionally, the 3DPSSM threading also suggested that the LAGLIDADG endonuclease domain [ 18] (E-value 0.2; approximately 80% certainty) shared a common fold with the KilA-N proteins.