Example sentences for: docking

How can you use “docking” in a sentence? Here are some example sentences to help you improve your vocabulary:

  • A rapid docking procedure with flexible ligand and a grid representation of the receptor was followed by an extensive Monte Carlo energy minimization with both ligand and receptor side chains flexible (see "Materials and Methods" for details).

  • The structures at 0.01 ps, 0.1 ps, 1 ps and 10 ps were recorded and processed in the docking step.

  • The procedure followed for each ligand was similar than the grid docking previously described [ 21 ] : each flexible ligand of the ChemDiv public library (ChemDiv Inc., San Diego) was docked automatically into the combination of potential maps described above, and assigned a score according to its fit with the alpha4-beta2 nAChR.

  • From the ferry docking station on the west bank, head to the nearby ticket office where you can purchase tickets for all the separate archaeological sites.

  • The flexible ligand / grid receptor docking algorithm implemented in ICM was applied, with ECEPP/3 force field and MMFF partial charges for the ligand, and hydrophobic, electrostatic, hydrogen-bond and surface potential maps for the receptor [ 18 19 10 ] . Further optimization with flexible ligand and full atom representation of the receptor was carried out by local energy minimization, where all side-chains within 6 A of the ligand were flexible [ 18 ] . When docking was performed in the presence of a water molecule, the later was included in the grid representation of the receptor, and was mobile during full-atom local minimization.


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