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Example sentences for: cgi-bin
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Transcription factor binding sites were identified with MatInspector at http://genomatix.gsf.de/cgi-bin/matinspector/matinspector.pl [ 39].
Once a sequence containing the desired polymorphism was selected (usually 400-700 bp in length), it was run through the Repeat Masker program http://ftp.genome.washington.edu/cgi-bin/RepeatMaskerin order to avoid selecting PCR primers within Alu, L1, or other repeats.
Primers used for amplification of BMP-5 cDNA were designed to unique sequences of rat BMP-5 using the Primer3 program http://www-genome.wi.mit.edu/cgi-bin/primer/primer3_www.cgi.
A user interface is available at http://gene.cpmc.columbia.edu/cgi-bin/gene.cgi.
The gene was located in the approximate interval both cytologically and on the Santa Cruz map http://genome.ucsc.edu/cgi-bin/hgGateway?db=hg10, but was located on chromosome 16p on the NCBI map (builds 25 to 28).