Words similar to bioinfo

Example sentences for: bioinfo

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The fasta_groups.txt file is particularly useful for subsequent Clustal X (Clustal X Help http://www-igbmc.u-strasbg.fr/BioInfo/ClustalX/Top.html; [ 4 5 ] ) and BLAST analyses (BLAST http://www.ncbi.nlm.nih.gov/BLAST/; [ 6 ] ). The second output file, group_seqs.txt, contains the group name and all sequences from the group.
We ran locally the Gibbs sampler algorithm provided by C. Lawrence's group at http://www.wadsworth.org/resnres/bioinfo/, as described in Results.
The hairpin was calculated to be stable at 60°C in the context of the entire OCP using the DNA folding server at Michael Zucker's website http://bioinfo.math.rpi.edu/~zukerm/OCP sequence was chosen such that the hairpin was the only stable structure in the OCP, with a ΔG of -0.
The mfold computer program version 3.0 http://bioinfo.math.rpi.edu/~mfold/rna/form1.cgiwas used to predict the RNA secondary structure and to calculate the folding free energy [ 26 27 ] . We have computed the minimum-free-energy structures from all the donor- and acceptor sites of the 60 exons of NF1 within a window of 100 bp.