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Example sentences for: bdgp

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Sequence retrieval was initiated via BLASTN searches (default parameters- [ 37 ] ) against the BDGP http://www.fruitfly.organd GenBank http://www.ncbi.nlm.nih.govdatabases using LTRs from previously identified Drosophila retroelements as queries [ 15 ] . Results with E-values < e -10were annotated on the corresponding clone, whereupon visual inspection of several annotations confirmed the presence of retroelements proximal to known genes.
Moreover, cDNA sequences designated as full length may actually be truncated; approximately 1,000 of the 9,000 full-insert sequences from the BDGP are probably not full-length [ 29, 30].
The BDGP also submits to GenBank the cDNA sequence from the DGC project.
The number of ESTs generated by the BDGP project increased from around 86,000 in Release 2 to 246,248 in Release 3 [ 29] and the number of sequenced full-insert cDNAs from around 1,000 in Release 2 to over 9,000 in Release 3 [ 30].
The client application uses several open source components: the Berkeley Drosophila Genome Project (BDGP) Java Toolkit [ 14 ] for utility classes; Browser Launcher [ 15 ] for cross-platform web browser integration; Jakarta-ORO [ 16 ] for text processing; the Jena Semantic Web Toolkit [ 17 ] for manipulating RDF models; MySQL Connector/J [ 18 ] for database connectivity; and Xerces [ 19 ] for parsing XML.