Words similar to ylxr

Example sentences for: ylxr

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Using the examples of YlxR and YbaK, JEvTrace identified residues clustering around the putative conserved functional residue(s), thus validating a functional prediction.
An example of a protein with unknown function is PDB 1G2R, representing the ylxR gene from Streptococcus pneumoniae [ 21].
The structure of YlxR is complexed with three sulfate ions, two of which are bound to the arginines R25 and R45, and the third to a lysine pair K62 and K63.
Several features of the structure of YlxR, including the conserved and appropriately spaced arginines that could form a characteristic positively charged surface patch (colored red in Figure 2b,2c) and a large bent groove reminiscent of other RNA-binding structures, support the argument that YlxR is an RNA-binding protein.
For discovery of additional functional properties, as in the case of a new binding epitope in YlxR or the extensive putative binding site and positively charged epitope in YbaK, JEvTrace provided phylogenetic evidence of clusters of residues on the protein surface.