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Example sentences for: ucsc

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Transcript mapping was done based on the October 2000 Freeze of the University of California at Santa Cruz's working draft sequence http://genome.ucsc.edu, which presents a tentative assembly of the finished and draft human genomic sequence based on the Washington University-Saint Louis clone map http://genome.wustl.edu/gsc.
The resulting contigs were then ordered and oriented according to the FPC order and orientation information in the UCSC genome assembly, resulting in a numeric sorting order for all the individual contigs.
The index was first ordered and oriented for the individual BAC contigs according to Ensembl or UCSC [ 85] maps.
Probes were selected that flank known sites of genomic rearrangement based upon previous yeast artificial chromosome (YAC) and BAC/PAC mapping studies, together with the human sequence map available from the University of California at Santa Cruz (UCSC) Genome Browser [ 11 12 13 14 15 ] . Probes flanking the Prader-Willi/Angelman syndrome breakpoints, in addition to a characterized inv dup(15) rearrangement were selected to test the possibility that the pericentric inversion evolutionary breakpoint corresponded to a site of known human genomic instability (Figure 1).
The gene was located in the approximate interval both cytologically and on the Santa Cruz map http://genome.ucsc.edu/cgi-bin/hgGateway?db=hg10, but was located on chromosome 16p on the NCBI map (builds 25 to 28).