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Example sentences for: ucsc

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The resulting contigs were then ordered and oriented according to the FPC order and orientation information in the UCSC genome assembly, resulting in a numeric sorting order for all the individual contigs.
The index was first ordered and oriented for the individual BAC contigs according to Ensembl or UCSC [ 85] maps.
We identified two known duplications from this analysis, which is in agreement with previous segmental duplication analyses available from the UCSC Genome Browser [ 14 16 ] . The first is derived from the a duplication of the CHRNA7 gene, characterized in detail by Riley et al . [ 17 ] . This sequence was duplicated from the intact CHRNA7 locus in 15q13.
In addition, large gap information (> 50 kb) available from the UCSC assembly was incorporated into the same index, where no overlapping information was available between presumably adjacent BACs.
Approaches using aggregation adapt well to the dynamics of collaborative groups which are focused on sharing results as they accrue; examples are the University of California Santa Cruz (UCSC) genome browser [ 3] and the Distributed Annotation System (DAS) [ 4].