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Example sentences for: trembl

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The following databases were used: Human UTR-DB (EBI) (version 13) [ 70]; Human Transcript Database (Baylor University) (version 1) [ 71]; GenBank CDS (NCBI) (only PRI mRNA sequences were used, version 119) [ 72]; HINT (Ohio State University) [ 73]; EST Assembly Project (University of Washington) [ 74]; TIGR Human Gene Index (version 4.5) [ 75]; dbEST (NCBI) (version 119) [ 76]; MINT and RINT (Ohio State University) [ 73]; EMBL Rodent (EMBL) (version 63) [ 77]; SWISS-PROT (EMBL) (version 39) [ 78]; TrEMBL (EMBL) (version 14) [ 78]; PIR (MIPS-JIPID) (version 65) [ 79]; and Pfam (Sanger Centre) (version 5.4) [ 80].
We used the SWISS-PROT and TrEMBL protein databases [ 13] and the PEP-QC software program [ 12] to validate the integrity of the annotations and to track consistency with previously published data (see Materials and methods).
SWISS-PROT/TrEMBL validation of the translated models by PEP-QC is described below.
A non-redundant set of SWISS-PROT and TrEMBL Drosophila sequences was created, and sequences representing purely hypothetical or computational gene models (those corresponding to CG, BG, or EG genes in FlyBase) were excluded.
The TrEMBL database [ 81] contains the translations of all CDS present in the EMBL Nucleotide Sequence Database [ 8, 9], which are not yet integrated into SWISS-PROT [ 80].