Words similar to trembl
Example sentences for: trembl
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Of the 3,687 annotated peptides with a cognate in the curated SWISS-PROT/TrEMBL dataset, 75% (2,764) were of identical length and had more than 99% sequence identity.
The following databases were used: Human UTR-DB (EBI) (version 13) [ 70]; Human Transcript Database (Baylor University) (version 1) [ 71]; GenBank CDS (NCBI) (only PRI mRNA sequences were used, version 119) [ 72]; HINT (Ohio State University) [ 73]; EST Assembly Project (University of Washington) [ 74]; TIGR Human Gene Index (version 4.5) [ 75]; dbEST (NCBI) (version 119) [ 76]; MINT and RINT (Ohio State University) [ 73]; EMBL Rodent (EMBL) (version 63) [ 77]; SWISS-PROT (EMBL) (version 39) [ 78]; TrEMBL (EMBL) (version 14) [ 78]; PIR (MIPS-JIPID) (version 65) [ 79]; and Pfam (Sanger Centre) (version 5.4) [ 80].
SWISS-PROT, TrEMBL, PIR (Protein Information Resource) and Pfam (Protein Families database) were used to annotate our unified gene index, because functional keywords in these databases are standardized [ 34] (Table 3).
SPTRREAL is composed of 3,687 D. melanogaster sequences from the SWISS-PROT and TrEMBL protein databases [ 31] and provides a curated protein-sequence database with a high level of annotation, a minimal level of redundancy and the absence of any hypothetical or computational gene models.
Included among the most conserved nematode-specific proteins were previously characterized nematode-specific domains including the transthyretin-like domain IPR001534 [ 55 ] (MI00092.c1), as well as uncharacterized C. elegans hypothetical proteins (for example, MI01590.cl = TrEMBL Q19251; MI00719.cl = TrEMBL P90889).
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