Words similar to thif

Example sentences for: thif

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Moreover, the placement of Ps-moeZ in the ThiF tree was not changed when full-length MoeZ AA sequences were analyzed using the same methods.
Although they were not included in the analysis presented here, the homologies of Ps-moeZ to sequences in the unfinished microbial genomes of M. avium , M. bovis , and M. smegmatis were also very high and thus provide additional support for the placement of Ps-moeZ in the ThiF tree and suggest that the direction of LGT was from a mycobacterial species to P. stutzeri .
A similar search using Pa-MoeB as the query yielded 146 sequences with a domain structure similar to MoeB, most of which were entered into the database as MoeB, ThiF, HesA, or ubiquitin-activating enzymes from archaea, bacteria, and eukaryota.
The topology of the ThiF domain tree matches the SSU tree except that Ps-moeZ , which was adjacent to M. loti in the SSU tree, appeared between the cyanobacteria and mycobacteria clades (Figure 4).
All 12 sequences in this region have high similarity to the derived consensus sequence GXGXXG(7X)A(SX)GXGXXG(4X)D(9X)R, which defines a nucleotide binding motif [ 16 25 ] . In addition, all sequences have five residues, or conservative substitutions in the case of Pa-MoeB, shown to participate in the adenylation reaction catalyzed by Ec-MoeB (Figure 3) [ 7 ] . The fact that such high similarities are retained in the ThiF coding region across three bacterial divisions suggests that this domain functions more or less autonomously.