Words similar to swir
Example sentences for: swir
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An additional database, nrnonem, is an amino-acid database of all non-nematode proteins derived from SWIR v.21.
As an alternative means of assigning function to clusters, clusters were also assigned to metabolic pathways using KEGG [ 102 103 ] . Assignments were made by requiring that the highest-scoring BLAST match in SWIR v.21 have an assigned enzyme commission (EC) number [ 104 ] . EC number mappings to KEGG pathways were then used to putatively assign clusters into biochemical pathways.
Following clustering, comparative analyses were performed using WU-BLASTX and WU-TBLASTX [ 92 93 ] with 1,798 contig consensus sequences (themselves grouped into 1,625 cluster groups) as queries versus multiple databases including SWIR v.21 (5/19/2000) non-redundant protein database and Wormpep v.54 C. elegans protein database (Wellcome Trust Sanger Institute, unpublished work), C. elegans mitochondrial protein sequences, and six internally constructed databases using intersections of data from the GenBank nucleotide database and dbEST [ 96 ] . These include: nemnoele (all nucleotide data from the phylum Nematoda with C. elegans removed); nemnoelenomi (nemnoele with M. incognita removed); nemnoelenomel (nemnoele with all Meloidogyne species removed); nemnoelenotyl (nemnoele with all Tylenchida species removed); yestylnomel (all Tylenchida species except Meloidogyne ); mj (only M. javanica sequences).
To estimate the number of 5' versus 3' reads, we examined the 4,198 ESTs with detectable homology on either sense or antisense strands at time of submission (BLASTX search versus the SWIR non-redundant protein database, Sanger Centre).
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